variable size data sending, spi mode change fix, wb1mmc write start
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@@ -4,47 +4,31 @@ from scipy import signal
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import time
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import serial
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ser = serial.Serial(port = '/dev/ttyACM1', timeout = 10.0)
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ser.reset_input_buffer()
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start = time.time()
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for i in range(50):
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ser.write(b'R')
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cons = ser.read(1024)
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print(1024 * 50 / (time.time() - start))
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quit()
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format_string=(
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b"""packet_rtc 1 28 uint32_t t 0 4 RTC_TimeTypeDef sTime 4 20 RTC_DateTypeDef sDate 24 4
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packet_vbatt 2 8 uint32_t t 0 4 uint16_t vbatt_cnts 4 2
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packet_imu 9 12 uint32_t t 0 4 uint16_t readings_cnts[4] 4 2
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packet_ekg 3 208 uint32_t t 0 4 uint8_t index 4 1 int32_t readings_cnts[50] 8 4
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packet_strain 4 28 uint32_t t 0 4 uint8_t index 4 1 int32_t readings_cnts[5] 8 4
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packet_outsideT 5 28 uint32_t t 0 4 uint8_t index 4 1 int32_t readings_cnts[5] 8 4
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packet_insideT 6 28 uint32_t t 0 4 uint8_t index 4 1 int32_t readings_cnts[5] 8 4
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packet_button 7 8 uint32_t t 0 4 uint8_t button_vec 4 1
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packet_spo2 8 304 uint32_t t 0 4 uint32_t green_cnts[25] 4 4 uint32_t red_cnts[25] 104 4 uint32_t ir_cnts[25] 204 4""")
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types = []
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def arr_sizes(s):
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if s[-1:] != b']' or b'[' not in s:
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return 1
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v = int(s[s.rindex(b'[') + 1:-1])
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return v
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for line in format_string.split(b"\n"):
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line = line.strip(b'\n').strip(b'\r')
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if line != b'':
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L = line.split(b" ")
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types.append({'type_name' : L[0],
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'type_code' : int(L[1]),
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'size' : int(L[2]),
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'elements' : []
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})
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i = 3
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while i < len(L):
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types[-1]['elements'].append({'type_name' : L[i], 'name' : L[i + 1], 'offset' : int(L[i + 2]), 'n_elements' : arr_sizes(L[i + 1]), 'size' : int(L[i + 3]) * arr_sizes(L[i + 1]), 'readings' : []})
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i += 4
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def get_type_list(ser):
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ser.write(b'?')
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types = []
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for i in range(13):
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line = ser.readline().strip(b'\n').strip(b'\r')
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if line != b'':
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L = line.split(b" ")
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types.append({'type_name' : L[0],
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'type_code' : int(L[1]),
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'size' : int(L[2]),
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'elements' : []
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})
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i = 3
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while i < len(L):
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types[-1]['elements'].append({'type_name' : L[i], 'name' : L[i + 1], 'offset' : int(L[i + 2]), 'n_elements' : arr_sizes(L[i + 1]), 'size' : int(L[i + 3]) * arr_sizes(L[i + 1])})
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i += 4
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return types
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def my_filter(arr):
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inds = np.where(np.abs(np.diff(arr)) > 0.005)[0]
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@@ -57,81 +41,125 @@ def my_filter(arr):
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next_ind += 1
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arr[ind] = 0.5 * arr[prev_ind] + 0.5 * arr[next_ind]
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return arr
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def update_with_data():
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nyquist = 0.5 * 250
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b, a = signal.butter(2, 100 / nyquist, btype='low', analog = False)
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fig, axs = plt.subplots(2)
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adcs = []
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accs = []
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gyros = []
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accs = []
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gyros = []
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def process_imu(d, t):
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global accs
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global gyros
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for e in t['elements']:
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block = d[e['offset']:e['offset'] + e['size']]
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element_size = int(len(block) / e['n_elements'])
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if e['name'] == b'data[141]':
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for i in range(20):
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reading = block[1 + 7 * i : 8 + 7 * i]
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#print(reading)
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imu_reading_type = reading[0] >> 3
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imu_reading_tag_cnt = (reading[0] >> 1) & 3
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data = np.array([int.from_bytes(reading[2 * i + 1 : 2 * i + 3], byteorder = 'little', signed = True) for i in range(3)])
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if imu_reading_type == 1:
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gyros.append(250 / (1<<16) * data)
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elif imu_reading_type == 2:
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accs.append(4 / (1<<16) * data)
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else:
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assert False
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if len(gyros) > 400:
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gyros = gyros[-400:]
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if len(accs) > 400:
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accs = accs[-400:]
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fig, axs = plt.subplots(2)
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g = np.array(gyros)
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a = np.array(accs)
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axs[0].set_ylabel("dps")
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axs[0].plot(g[:,0])
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axs[0].plot(g[:,1])
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axs[0].plot(g[:,2])
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axs[1].set_ylabel("g")
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axs[1].plot(a[:,0])
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axs[1].plot(a[:,1])
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axs[1].plot(a[:,2])
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plt.savefig("acc_gyro.png")
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plt.close()
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def update_with_data(ser, types):
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ser = serial.Serial(port = '/dev/ttyACM1', timeout = 10.0)
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ser.timeout = 3
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ser.reset_input_buffer()
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start = time.time()
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while(True):
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ser.write(b'R')
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cons = ser.read(1024)
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if True:
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index = 0
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while (index < 1024):
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#print(index, len(cons))
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packet_type = (cons[index + 1]<<8) + cons[index]
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print(index, packet_type)
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ind = [i for i,t in enumerate(types) if t['type_code'] == packet_type]
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if len(ind) != 1:
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break
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t = types[ind[0]]
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d = cons[index + 2 : index + 2 + t['size']]
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for e in t['elements']:
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block = d[e['offset']:e['offset'] + e['size']]
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element_size = int(len(block) / e['n_elements'])
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if t['type_name'] == b'packet_ekg' and e['name'] == b'readings_cnts[50]':
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chunked = [(2.4 / (1<<24)) * int.from_bytes(block[i:i + element_size], byteorder='little', signed = True) for i in range(0, len(block), element_size)]
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adcs += chunked
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if len(adcs) > 500:
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dat = np.array(adcs[-2048:])
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if len(adcs) > 2048:
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adcs = adcs[-2048:]
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#filtered_dat = my_filter(dat)
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filtered_dat = dat
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filtered_dat = signal.filtfilt(b, a, filtered_dat)
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dd = np.sort(dat)
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center = 0.5 * (dd[-100] + dd[100])
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range_ = dd[-100] - dd[100]
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if len(dat) == 2048:
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print("Freq:", 2048 / (time.time() - start))
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axs[0].cla()
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axs[1].cla()
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axs[0].set_title("ADC {:3.3f}mV".format(1000 * (range_)))
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#axs[0].plot(dat, 'r.', linestyle = '--')
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axs[0].plot(filtered_dat, 'k.', linestyle = '--')
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#axs[0].set_ylim(center - range_, center + range_)
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_fft = np.log(np.abs(np.fft.fft(filtered_dat)[1:]))
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axs[1].plot(250 * np.fft.fftfreq(dat.shape[-1])[1:], _fft, 'k.')
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axs[1].axvline(x = 60)
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plt.savefig("image.png")
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ser.write(b'r')
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size = int.from_bytes(ser.read(4), byteorder = 'little', signed = False)
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cons = ser.read(size)
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index = 0
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while (index < size):
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packet_type = cons[index]
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t = [t for t in types if t['type_code'] == packet_type][0]
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#print(index, packet_type, t['type_name'])
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d = cons[index + 1 : index + 1 + t['size']]
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if t['type_name'] == b'packet_imu':
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process_imu(d, t)
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if t['type_name'] == b'packet_msg':
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print(d)
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index += 1 + t['size']
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# if t['type_name'] == b'packet_ekg' and e['name'] == b'readings_cnts[50]':
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# chunked = [(2.4 / (1<<24)) * int.from_bytes(block[i:i + element_size], byteorder='little', signed = True) for i in range(0, len(block), element_size)]
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# adcs += chunked
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# if len(adcs) > 500:
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# dat = np.array(adcs[-2048:])
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# if len(adcs) > 2048:
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# adcs = adcs[-2048:]
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# #filtered_dat = my_filter(dat)
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# filtered_dat = dat
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# filtered_dat = signal.filtfilt(b, a, filtered_dat)
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# dd = np.sort(dat)
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# center = 0.5 * (dd[-100] + dd[100])
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# range_ = dd[-100] - dd[100]
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# if len(dat) == 2048:
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# print("Freq:", 2048 / (time.time() - start))
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# axs[0].cla()
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# axs[1].cla()
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# axs[0].set_title("ADC {:3.3f}mV".format(1000 * (range_)))
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# #axs[0].plot(dat, 'r.', linestyle = '--')
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# axs[0].plot(filtered_dat, 'k.', linestyle = '--')
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# #axs[0].set_ylim(center - range_, center + range_)
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# _fft = np.log(np.abs(np.fft.fft(filtered_dat)[1:]))
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# axs[1].plot(250 * np.fft.fftfreq(dat.shape[-1])[1:], _fft, 'k.')
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# axs[1].axvline(x = 60)
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# plt.savefig("image.png")
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# if t['type_name'] == b'packet_imu' and e['name'] == b'readings_cnts[4]':
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# imu_reading_type = block[0] >> 3
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# imu_reading_tag_cnt = (block[0] >> 1) & 3
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# reading_xyz = [int.from_bytes(block[2:4], byteorder = 'big', signed = True),
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# int.from_bytes(block[4:6], byteorder = 'big', signed = True),
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# int.from_bytes(block[6:8], byteorder = 'big', signed = True)]
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# if imu_reading_type == 1:
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# #print("{:02x} {:d}".format(imu_reading_type, imu_reading_tag_cnt))
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# gyros.append([250 * e / (1<<16) for e in reading_xyz])
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# elif imu_reading_type == 2:
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# accs.append([4 * e / (1<<16) for e in reading_xyz])
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# else:
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# print("ERR")
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if t['type_name'] == b'packet_imu' and e['name'] == b'readings_cnts[4]':
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imu_reading_type = block[0] >> 3
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imu_reading_tag_cnt = (block[0] >> 1) & 3
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reading_xyz = [int.from_bytes(block[2:4], byteorder = 'big', signed = True),
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int.from_bytes(block[4:6], byteorder = 'big', signed = True),
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int.from_bytes(block[6:8], byteorder = 'big', signed = True)]
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if imu_reading_type == 1:
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#print("{:02x} {:d}".format(imu_reading_type, imu_reading_tag_cnt))
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gyros.append([250 * e / (1<<16) for e in reading_xyz])
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elif imu_reading_type == 2:
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accs.append([4 * e / (1<<16) for e in reading_xyz])
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else:
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print("ERR")
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index += 2 + t['size']
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def main():
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update_with_data()
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ser = serial.Serial(port = '/dev/ttyACM1', timeout = 0.5)
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ser.flush()
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ser.reset_input_buffer()
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types = get_type_list(ser)
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# ser.write(b'1')
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# ser.write(b'3')
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# ser.write(b'5')
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ser.flush()
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update_with_data(ser, types)
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main()
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